Volume Menu

Anatomy Submenu

Create New Volume
   Launches a dialog for creating a new volume.

Edit Volume Parameters  Launches a dialog for editing a volume's parameters such as origin and voxel size.

Mathematical Operations  Launches a dialog for performing mathematical operations on volume files.

Paint Submenu

Probabilistic Atlas Submenu

Region Of Interest Operations  Launches a dialog for performing volume region of interest operations.

Resize Underlay Volume  Launches a dialog for resizing the selected underlay volume.

Segmentation Submenu  

Show Voxel Dimensional Extent  Dispalys a dialog that shows the range (in slices) of non-zero voxels in a volume.

SureFit Operations (Segmentation)
Perform segmentation operations on an anatomy volume and/or generate various surface files from a segmentation volume.

Transform Submenu

Anatomy Submenu

Bias Correction  Launches a dialog for bias (non-uniformity) correction of the selected anatomical volume.
Threshold into Segmentation  Segment an anatomical volume using only a threshold.

Paint Submenu


Edit Voxels   Displays a dialog that allows editing of voxels in the currently displayed paint volume.  The mouse pointer functions as a paint brush.

Probabilistic Atlas Submenu

Convert Probabilistic Atlas to Functional   Count the number of valid names (not ???, GYRAL, or GYRUS) for each voxel and store the results in a Functional Volume File.

Segmentation Submenu


Edit Voxels  Launches a dialog for editing the voxels in a segmentation volume.

Find Handles  Finds handles in a segmentation volume.

Pad Volume  Launches a dialog for padding a segmentation volume.

Reconstruct into Surface  Reconstructs the segmentation volume into a surface.

Remove Islands  Discards all but the largest connected set of voxels.

Transform Submenu

Apply Rotation  Apply the current rotation of the main window volume.

Rotation Enabled  Enable rotation of the main window volume (has a check mark when enabled).