[caret-users] Rhesus Macaque Cortical Partitioning

[Hamied Haroon]

Hi Donna and David,

 

Thanks very much for your kind replies and for letting me know what my
options are in Caret.

 

Many thanks again.

 

Best wishes,

 

Hamied

 

________________________________

From: caret-users-bounces at brainvis.wustl.edu
[mailto:caret-users-bounces at brainvis.wustl.edu] On Behalf Of David Van
Essen
Sent: 21 November 2007 04:00
To: Caret, SureFit, and SuMS software users
Subject: Re: [caret-users] Rhesus Macaque Cortical Partitioning

 

Hamied,

 

Donna is correct that Romanski et al is not one in our F99 atlas
dataset.  

 

There are various other schemes that include auditory cortex and are
available on our macaque F99 atlas 

(see Macaque.F99.RIGHT.DEMO.73730.spec in 

http://sumsdb.wustl.edu/sums/directory.do?id=6585200&dir_name=CARET_TUTO
RIAL_SEPT-06)

 

It is possible to add this partitioning scheme to our atlas collection,
using an approach similar to that done for other schemes originally
published as drawings of a qualitatively generated flat map.  However,
this is not something that I envision attending to in the near future,
give competing priorities.

 

David VE

 

On Nov 19, 2007, at 11:18 AM, Donna Dierker wrote:





Hi Hamied,

 

David will know for sure, but I don't see it in any of the paint file
column-names in the September 2006 tutorial.  The closest sounding one
was Preuss & Goldman-Rakic 91 Fig 4, the comment for which says:

 

Preuss, T.M., and P.S. Goldman-Rakic (1991a) Myelo- and cytoarchitecture
of the granular  frontal cortex and surrounding regions in the
strepsirhine primate galago and the anthropoid primate macaca. J. Comp
Neurol. 310:429-474
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dop
t=AbstractPlus&list_uids=1939732        Mapped from their Fig 4 to the
atlas left hemisphere using slice-based  registration (Caret Tutorial
10). Deformed with: Resampled_Macaque.F99UA1.

 

None of the files seems to contain "Romanski" (i.e., find
./CARET_TUTORIAL_SEPT06 -type f |xargs grep -ia Romanski returns no
results).

 

Donna

 

On 11/19/2007 11:02 AM, Hamied Haroon wrote:

	 

	Dear All,

	 

	 

	I want to apply a cortical partitioning scheme to MRI brain
data, acquired in a rhesus macaque, which matches the cortical areas
described in this reference

	 

	 

	L.M. Romanski, B. Tian, J. Fritz, M. Mishkin, P.S. Goldman-Rakic
& J.P. Rauschecker, "Dual streams of auditory afferents target multiple
domains in the primate prefrontal cortex", /Nat Neurosci/, *2*: 1131-6,
1999

	 

	 

	I would be very grateful if anyone could please let me know if
this cortical partitioning scheme might be available in Caret or
anywhere else on the web, or could offer me some constructive advice.

	 

	 

	Many thanks in anticipation.

	 

	 

	Best wishes,

	 

	 

	Hamied

	 

	 

	________________________________________________

	 

	 

	 Hamied Ahmad Haroon   PhD  AMInstP

	 

	 Research Associate in MR Neuroimaging

	 

	 Imaging Science and Biomedical Engineering Research Group

	 

	 School of Medicine

	 

	 Faculty of Medical and Human Sciences

	 

	 The University of Manchester

	 

	 Room G.603 Stopford Building, Oxford Road,

	 

	 Manchester   M13 9PT

	 

	 England, United Kingdom

	 

	 Tel: +44 (0)161 275 6871   Fax: +44 (0)161 275 5145

	 

	 Email: hamied.haroon at manchester.ac.uk
<mailto:hamied.haroon at manchester.ac.uk>

	 

	 Web: www.isbe.man.ac.uk/~hharoon
<http://www.isbe.man.ac.uk/%7Ehharoon>

	 

	________________________________________________

	 

	 

	 

	 

	
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