[caret-users] mapping functional data from SPM5

[David Van Essen]

Amy et al.,

As it happens, I was having what appears to be the same problem when  
attempting to map a functional volume myself yesterday and today!  It  
seems to be a glitch in Caret that occurs ONLY when you de-select  
everything except 'Show mapping to average fiducial surface'.

Try leaving 'Show Average of mapping to all multi-fiducial cases'  
selected.  Then it works for me.

OR, try 'Map to spec file with atlas', which also works for me, but  
you have to then open the metric file after it's created.

John now has this on his 'fix-it' list, but I'm not sure when the  
patch will be implemented.

David VE
  	
>>>> Hello Donna,
>>>> I've checked the files and we do have those files in the
>>> caret/data_files/fmri_mapping_files. but I still can not active  
>>> the "Metric" icon and do the next step.
>>>> I followed the below sequences and try to map functional volume to
>>> surface:
>>>> 1.Open "Human.PALS_B12.BOTH.TEMPLATE-for-fMRI-MAPPING.73730.spec"
>>>> 2.Load --> Attributes --> Map Functional Volumes To Surfaces
>>>>
>>>> 3.Add volumes From Disk (spmT_0001.hdr) <Here comes a message:If  
>>>> this ".hdr" file does not contain an SPM
>>> originator, it is unlikely that it will get mapped to
>>>> the surface correctly.> I think our file contain SPM originator.   
>>>> 4."Map to Caret with Atlas.." --> chose "Space-SPM2" and "Atlas-
>>> PALS_B12 Multi-Fid Map LEFT hemisphere(73730 nodes), SPM2 space"
>>>> 5.And then when we tried to open D/C, Metric icon can not be
>>> selected for overlay.
>>>> Any other suggestion for our problem?
>>>> Thanks so much,
>>>> Amy
>>>> (RA for Dr. Eugene Tunik)