[caret-users] FW: Problems during/after flattening

[Donna Dierker]

Hi Traci,

This doesn't seem to be the same dataset as the one you reference below.

This one is a different case number (115 vs 121), and I can't replicate 
the problem.  When I open Human.115.L.spec and select all, the only 
errors I get are for volumes that are missing from the archive you 
uploaded.  It opens all the files in the spec file.  It is worth noting, 
however, that there are files of two distinct meshes in the archive you 
uploaded:  One with 44857 nodes (covered by the spec) and another with 
45350 nodes.  You can't mix files across meshes, of course, but I see no 
evidence where the spec file contains files of different meshes.

Donna

On 07/18/2008 10:27 AM, Sandoval, Traci I wrote:
> I have uploaded the zip file, Traci.Sandoval.NPRLab.archive.tar.gz
> the number of bytes it is trying to read is exactly 3 times the amount that is being read? Thank you for your help. 
>
> Traci Sandoval
> NPR Lab
> University of Texas at Dallas 
>
>
> -----Original Message-----
> From: caret-users-bounces at brainvis.wustl.edu on behalf of Donna Dierker
> Sent: Wed 7/16/2008 1:30 PM
> To: Caret, SureFit, and SuMS software users
> Subject: Re: [caret-users] FW: Problems during/after flattening
>  
> Hi Traci,
>
> See inline replies below.
>
> Donna
>
> On 07/16/2008 12:11 PM, Sandoval, Traci I wrote:
>   
>> After I completed the flattening process and go to save all my files, 
>> I receive an error when I try to save the bordercolor file, it says it 
>> is open for writing and cannot save?
>>
>>     
> I can think of a few reasons why writing the bordercolor might fail:
>
> * Caret doesn't like the filename for some reason.
> * The file system is full.
> * You don't have write permission to the current directory.
>
> If you have ruled out the second and third reasons, then try a simple 
> name with no special characters or spaces (e.g., test.bordercolor). We 
> don't really save the flattening bordercolor, anyway; we use the 
> registration bordercolor set here:
>
> http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=6057499
>   
>> Once I close everything and try to open the files again I receive the 
>> following errors. I receive the bordercolor error everytime, but do 
>> not always receive the reading files error.
>>
>> You have selected border files that require a border
>> color file but no border color file is selected.
>>
>>     
> Again, you could open the 
> ForSPHERICAL.REGISTRATION_Human.Class3.bordercolor in the dataset linked 
> above, but its bordercolors won't match the pre-flattening border names; 
> they will match the post-flattening border color names in the 
> *fromFlattening*borderproj file.
>   
>> Error Human.121.L.SPHERE_aligned.071008.65070.coord: contains a 
>> different number of nodes than Human.121.L.Raw.65070.coord
>> Error .: Premature EOF reading zipped file. Tried to read
>> 6690888bytes. Actually read 2230296.
>>
>>     
> This is a different, more serious problem. The filenames suggest both 
> coords have 65070 nodes, but the error claims otherwise. The "Tried to 
> read 6690888bytes" seems excessive for a coord file. The 2230296 number 
> seems more reasonable. Was this imported from another format? If you 
> could upload it here, I could have a look at it:
>
> http://pulvinar.wustl.edu/cgi-bin/upload.cgi
>
> Often, though, it helps to have the whole dataset (i.e., the spec files 
> and all files listed in it, or the current working directory) archived 
> in .zip or .tar.gz form.
>   
>> Thank you for your help.
>>
>> Traci Sandoval
>>
>> Research Assistant
>>
>> University of Texas at Dallas
>>
>> Center for Brain Health
>>
>> NPR Lab
>>
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>>     
>
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