[caret-users] algorithm args backwards in caret_command?

[Donna Dierker]

Hi Bayle,

This command worked just fine for me:

caret_command -volume-map-to-surface test.scale.coord test.topo "" 
test.out.metric METRIC_ENCLOSING_VOXEL test.nii

That is, I didn't get the errors you cite below; however, I did get the 
patchiness described in your other message (see capture).

This usage matches my help output for this feature.

Donna

On 10/10/2008 08:43 PM, Baylis Shanks wrote:
> It seems like caret_command is reading in algorithm arguments backwards (compared to the order they are listed in caret_command -help-full):
>
>
> $ caret_command -volume-map-to-surface coord topo \"\" outfile METRIC_GAUSSIAN infile -g not_a_number 1 1 1 1 1
>
> VOLUME MAP TO SURFACE ERROR: Error converting parameter named "Gaussian Tangent Cutoff" with value "not_a_number" to a float
>
> bshanks at bshanks-salk:~/aba/niis_layer$ caret_command -volume-map-to-surface coord topo \"\" outfile METRIC_GAUSSIAN infile -g 1 not_a_number 1 1 1 1
>
> VOLUME MAP TO SURFACE ERROR: Error converting parameter named "Gaussian Norm Above Cutoff" with value "not_a_number" to a float
>
> bshanks at bshanks-salk:~/aba/niis_layer$ caret_command -volume-map-to-surface coord topo \"\" outfile METRIC_GAUSSIAN infile -g 1 1 1 1 1 not_a_number 
>
> VOLUME MAP TO SURFACE ERROR: Error converting parameter named "Guassian Neighbor Cube Size (mm)" with value "not_a_number" to a float
>
>
>
> this isn't a big problem since you can just put the args in backwards, but just fyi
>
> thanks,
>   bayle
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