[caret-users] Deformation from F99UA1-35946 to Resampled_Macaque-73730

[Donna Dierker]

Hi Terry,

There might be an easier way of doing this.  While borderproj files ARE tied to a specific mesh (e.g., 35946 vs 73730), border files are not.  You can try opening the source borderproj files on the fiducial surface, and then save them as border files.  Then, open the spec file of your target mesh, making sure the 73730 fiducial is in the main window.  Use File: Open Data File: Border File to open the border file you just saved.  Then use Layers: Borders: Project borders if needed to view the borders on the 73730 inflated.  (While you can see some of the borders on the fiducial, the inflated gives you a better view of most of them.)  Use File: Save Borderproj to save the new mesh borderproj.  Border projection has some error associated with it, but assuming you have the F99UA1 fiducial loaded in both specs, this should work.

Donna



----- Original Message ----
From: Terry <tsewards at cognisurf.com>
To: caret-users at brainvis.wustl.edu
Sent: Sunday, September 14, 2008 7:13:52 PM
Subject: Re: [caret-users] Deformation from F99UA1-35946 to Resampled_Macaque-73730

Hi,

I'm trying to deform my old *.borderproj files drawn on the 35946/34132 
macaque F99 atlas to the resampled 73730 atlas.  I used the 
Surface/Deformation/Apply Deformation Map menu, and chose the 
Resampled_Macaque.F99UA1.LEFT_REGISTER-with-73730-RESAMPLED-F99UA1.34132.spec.deform_map 
file for the Deformation Map File.  When I enter "Apply" the program 
runs for a little while, then stops with the error "Failure trying to 
open: Resampled_Macaque.F99UA1.Cerebral.L.SPHERE.STD.34132.coord".  I 
searched for the file (and its R_HEM counterpart) on SumsDB, but 
couldn't find it.  Are these files available elsewhere, or am I using 
the wrong procedure?

Sincerely,
Terry Sewards
_______________________________________________
caret-users mailing list
caret-users at brainvis.wustl.edu
http://brainvis.wustl.edu/mailman/listinfo/caret-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://brainvis.wustl.edu/pipermail/caret-users/attachments/20080915/703a27b2/attachment.html