[caret-users] Deformation from F99UA1-35946 to Resampled_Macaque-73730

[David Van Essen]

Terry,

1) Donna's suggestion from earlier today is a good one and should work  
for your situation.

2) In addition, I have tracked down and fixed the problem with the  
missing left hemisphere deformation-map file in question.  It was  
somehow inadvertently left out of the archive that was uploaded to  
SumsDB.   It was sitting on my laptop all along and has now been  
uploaded.

I also made other tweaks to the Macaque.F99.BOTH-HEMS.STANDARD-SCENES. 
73730.spec dataset, including the incorporation of links to the  
studies that underly various areal partitioning schemes.

The deform_map is now accessible at:
http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=6695140&archive_name=Resampled_Macaque.F99UA1.LEFT_REGISTER-with-73730-RESAMPLED-F99UA1.34132.spec.deform_map

as part of the larger archive:
http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=6695028&archive_name=Macaque.F99.BOTH-HEMS.STANDARD-SCENES.73730.spec

David


On Sep 15, 2008, at 4:26 AM, Donna Dierker wrote:
> Hi Terry,
>
> There might be an easier way of doing this.  While borderproj files  
> ARE tied to a specific mesh (e.g., 35946 vs 73730), border files are  
> not.  You can try opening the source borderproj files on the  
> fiducial surface, and then save them as border files.  Then, open  
> the spec file of your target mesh, making sure the 73730 fiducial is  
> in the main window.  Use File: Open Data File: Border File to open  
> the border file you just saved.  Then use Layers: Borders: Project  
> borders if needed to view the borders on the 73730 inflated.  (While  
> you can see some of the borders on the fiducial, the inflated gives  
> you a better view of most of them.)  Use File: Save Borderproj to  
> save the new mesh borderproj.  Border projection has some error  
> associated with it, but assuming you have the F99UA1 fiducial loaded  
> in both specs, this should work.
>
> Donna

On Sep 14, 2008, at 7:13 PM, Terry wrote:

> Hi,
>
> I'm trying to deform my old *.borderproj files drawn on the  
> 35946/34132
> macaque F99 atlas to the resampled 73730 atlas.  I used the
> Surface/Deformation/Apply Deformation Map menu, and chose the
> Resampled_Macaque.F99UA1.LEFT_REGISTER-with-73730-RESAMPLED- 
> F99UA1.34132.spec.deform_map
> file for the Deformation Map File.  When I enter "Apply" the program
> runs for a little while, then stops with the error "Failure trying to
> open: Resampled_Macaque.F99UA1.Cerebral.L.SPHERE.STD.34132.coord".  I
> searched for the file (and its R_HEM counterpart) on SumsDB, but
> couldn't find it.  Are these files available elsewhere, or am I using
> the wrong procedure?
>
> Sincerely,
> Terry Sewards
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