[caret-users] question for caret

[John Harwell]

Instructions on how to use the PALS atlas and how to map functional  
volumes to the PALS atlas is available at http://brainvis.wustl.edu/wiki/index.php/Caret:Documentation 
.  Download the Caret 5.5 Tutorial - The Basics (including PALS  
atlas).  Section 5.1 contains instructions on how to map a functional  
volume to the PALS atlas surfaces.  The human PALS atlas data set is  
available at http://sumsdb.wustl.edu/sums/humanpalsmore.do.

I am not familiar with the AAL template.  Do you know the stereotaxic  
space of AAL?  Caret currently supports 711-2x, AFNI, FLIRT, MRITOTAL,  
SPM2, SPM5, SPM95, SPM96, and SPM99.

Analyze files (hdr/img) typically lack the stereotaxic coordinate  
information needed to map the volume to the surface.

-----------------------------------
John Harwell
john at brainvis.wustl.edu

Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave   Box 8108
Saint Louis, MO 63110




On Mar 26, 2009, at 9:41 PM, Jinhui Wang wrote:

> Hi,
> will you please give me some help on how to map AAL template (.img  
> and .hdr; a public and used widely atlas) to PALS surface and  
> display it.   I have referred to some tutorial but don't solve it  
> yet.   Need i create some additional files?
>
> Sincerely
>
> -- 
> Jin-hui Wang
> State Key Laboratory of Cognitive Neuroscience and Learning,
> Beijing Normal University
> Add: No.19 Xinjiekouwai Street,
> Beijing, China. 100875
> Tel: +86 10 58802036
> Fax: +86 10 58806154
> E-mail:  wjhmjy at gmail.com
>            wjh122122 at yahoo.com.cn
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