[caret-users] MNI Surface

[Donna Dierker]

Hi Donald,

You have your pick in /caret_parent_dir/caret/data_files/fmri_mapping_files:

it.wustl.edu 104% grep description *spec | egrep -v '(AFNI|711)'
Human.colin.FLIRT_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.MRITOTAL_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM2.CEREBELLUM.168319.spec:description colin CEREBELLUM 
(168319 nodes), SPM2 space
Human.colin.SPM2_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM2.LEFT.71785.spec:description colin LEFT hemisphere 
(71785 nodes), SPM2 space
Human.colin.SPM2.RIGHT.71723.spec:description colin RIGHT hemisphere 
(71723 nodes), SPM2 space
Human.colin.SPM5.CEREBELLUM.168319.spec:description colin CEREBELLUM 
(168319 nodes), SPM5 space
Human.colin.SPM5_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM95_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM96_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM99.CEREBELLUM.168319.spec:description colin CEREBELLUM 
(168319 nodes), SPM99 space
Human.colin.SPM99_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC 
Cerebellum (73730) converted from Colin Atlas
Human.colin.SPM99.LEFT.71785.spec:description colin LEFT hemisphere 
(71785 nodes), SPM99 space
Human.colin.SPM99.RIGHT.71723.spec:description colin RIGHT hemisphere 
(71723 nodes), SPM99 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.LEFT.73730.spec:description 
PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), MNI305 (FLIRT) space
Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description 
PALS_B12Multi-Fid Map RIGHT hemisphere (73730 nodes), MNI305 (FLIRT) space
Human.PALS_B12.LR.MULTI-FIDUCIAL_MRITOTAL_fMRI-MAPPER.B1-12.LEFT.73730.spec:description 
PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), MRITOTAL space
Human.PALS_B12.LR.MULTI-FIDUCIAL_MRITOTAL_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description 
PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), MRITOTAL space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM2_fMRI-MAPPER.B1-12.LEFT.73730.spec:description 
PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM2 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM2_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description 
PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM2 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM5_fMRI-MAPPER.B1-12.LEFT.73730.spec:description 
PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM5 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM5_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description 
PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM5 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.LEFT.73730.spec:description 
PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM99 space
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description 
PALS_B12Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM99 space

The FLIRT, MRITOTAL, and SPM* "spaces" are all based in some way on 
MNI152 or MNI305, both of which are in the same "space," the way I look 
at it.  The MRITOTAL one actually uses the MNI305 template, while the 
others use avg152T1, which is in the same space as MNI305.  This page 
might help:

http://brainvis.wustl.edu/help/pals_volume_normalization/

Donna

On 05/26/2009 11:44 PM, MCLAREN, Donald wrote:
> Is there a PALS or Colin surface that is in MNI space?
>
> -- 
> Best Regards, Donald McLaren
> =====================
> D.G. McLaren
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> Neuroscience Training Program
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