[caret-users] Problem segmenting macaque brain

Jochen Ditterich jd at shadlen.org
Fri Apr 2 13:20:32 CDT 2010

Hi Donna and John,

I am trying to segment a macaque brain and to flatten the cortex, but I 
haven't been able to make it through the segmentation process without 
error messages. I am not sure whether this is due to quality issues with 
the MRI or whether it has something to do with the implanted recording 
chambers. I have uploaded a file named "freckles.zip" that contains both 
the uncropped volume as well as the cropped volumes for the two 
hemispheres. Any feedback would be appreciated. Does anybody have 
experience segmenting MRIs taken from animals with implants?

Thanks a lot,



Jochen Ditterich, Ph.D.
Assistant Professor
Center for Neuroscience
University of California
1544 Newton Court
Davis, CA 95618

office: +1 (530) 754-5084
lab:    +1 (530) 754-6987
fax:    +1 (530) 757-8827

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