[caret-users] caret_map_fmri

John Harwell john at brainvis.wustl.edu
Fri Mar 26 10:19:02 CDT 2010


Hi Julie,

"caret_map_fmri" is a program that was eliminated several years ago.  Make sure you have the latest version of Caret, 5.613.

In place of "caret_map_fmri" use "caret_command   -volume-map-to-surface".

Try: 

caret_command  -volume-map-to-surface   \
   /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord   \
   /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo   \
   ""   \              <== This is the name of an input metric file to which data is appended.  An empty name (two double quotes) means create a new metric file.
   Rtest.metric   \
   METRIC_ENCLOSING_VOXEL  \
   cCue_EndoLeft.hdr
   

John Harwell


On Mar 26, 2010, at 9:28 AM, Julia Bender wrote:

> 
> 
> Hi,
> 
> I'm having trouble using caret_map_fmri. I'm running:
> 
> caret_map_fmri -m Rtest.metric -s
> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.spec
> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo
> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord -v
> cCue_EndoLeft.hdr
> 
> I get:
> Unrecognized preferences data type
> BINARY:BINARY:BINARY:BINARY:BINARY:BINARY:BINARY
> ERROR: Error  cCue_EndoLeft.hdr: No such file or directory
> 
> I'm running the command in the directory where my statistical maps (e.g.
> cCue_EndoLeft.hdr) for this subject are and I have full permission on all
> files.
> 
> I'm using caret (current release) on a linux machine (openSUSE 11.2).Does
> anyone have an idea what could be wrong?
> 
> 
> Thanks a lot!
> 
> Julia
> 
> 
> 
> Dipl. Psych. Julia Bender
> Humboldt Universität zu Berlin
> Mathematisch - Naturwissenschaftliche Fakultät II
> Institut für Psychologie, Abt. Klinische Psychologie
> Unter den Linden 6
> D-10099 Berlin
> 
> 
> 
> Dipl. Psych. Julia Bender
> Humboldt Universität zu Berlin
> Mathematisch - Naturwissenschaftliche Fakultät II
> Institut für Psychologie, Abt. Klinische Psychologie
> Unter den Linden 6
> D-10099 Berlin
> 
> _______________________________________________
> caret-users mailing list
> caret-users at brainvis.wustl.edu
> http://brainvis.wustl.edu/mailman/listinfo/caret-users
> 





More information about the caret-users mailing list