[caret-users] AAL 3D rendering

donna at brainvis.wustl.edu donna at brainvis.wustl.edu
Mon Mar 21 11:56:19 CDT 2016


I put two GIFTI surf.gii files here:

http://brainmap.wustl.edu/pub/donna/GERMANY/MAGDEBURG/
login pub
password download
Human.colin.Cerebral.L.FIDUCIAL.SPM2.03-12.71785.surf.gii
Human.colin.Cerebral.R.FIDUCIAL.SPM2.03-12.71723.surf.gii

I exported them to GIFTI from these files, which are part of the Caret
distribution:

/usr/local/caret/data_files/fmri_mapping_files
Human.colin.SPM2.LEFT.71785.spec
Human.colin.SPM2.RIGHT.71723.spec

I can't guarantee that Freeview will read GIFTI, but many Freesurfer
binaries do.

This is a midthickness surface.


> Dear Friends,
>
> I need a surface compatible with AAL volume with the dimensions from
> MNI152 2mm (91x109x91).
>
> I learned that Caret has the “spec” files from Colin27, which was the
> brain reference for AAL.
>
> Does someone knows a straightforward way to load this surface on FreeView
> from FreeSurfer ?
>
> Thanks for the help,
>
> --
> João V. Dornas
> Phd student in Neuroscience
> Cognitive Biology Group, Institute of Biology
> Otto von Guericke University, Magdeburg
> Germany
>
> _______________________________________________
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> caret-users at brainvis.wustl.edu
> http://brainvis.wustl.edu/mailman/listinfo/caret-users
>




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