[caret-users] read border file into Matlab

HINDRIKS, RIKKERT rikkert.hindriks at upf.edu
Mon Nov 14 11:14:16 CST 2016


I will. thanks again

Rikkert

On Mon, Nov 14, 2016 at 5:17 PM, Rouhollah Abdollahi <roohy466 at gmail.com>
wrote:

>
> Then you may check this link to find out the file structure:
>
> http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/
> file_formats/file_formats.html
>
>
> Best Regards
> Rouhi
>
> Best Regards
> Rouhollah Abdollahi
>
> *Institut für Neurowissenschaften und Medizin (INM-3)*
> Forschungszentrum Jülich
> Leo-Brandt-Straße
> 52425 Jülich, GermanyTel: +49 2461 61-9324
>
>
>
> On Mon, Nov 14, 2016 at 4:33 PM, HINDRIKS, RIKKERT <
> rikkert.hindriks at upf.edu> wrote:
>
>> Dear Rouhi,
>>
>> Thanks for your fast reply. I already have the atlas file itself loaded
>> into Matlab (at the moment, I use the
>> multi-model atlas from [Glasser, 2013] but this could be any atlas) and I
>> just want to be able to visualize
>> the ROI borders, that's all.
>>
>> Kind regards,
>> Rikkert
>>
>> On Mon, Nov 14, 2016 at 2:57 PM, Rouhollah Abdollahi <roohy466 at gmail.com>
>> wrote:
>>
>>> Dear Rikkert,
>>>
>>> What kind of analysis do you want to carry out? Do you want to  check
>>> the overlapping surfaces?
>>> As far as I know, it is much easier to work with paint or metric, files,
>>> because you are dealing with surface nodes and it is only one column of
>>> data. Also  it is easily readable in Matlab if you are using Gifti format
>>> using Gifti Library. (https://www.nitrc.org/projects/gifti/).
>>>
>>> Hope it helps.
>>>
>>> best regards
>>> Rouhi
>>>
>>>
>>> *Institut für Neurowissenschaften und Medizin (INM-3)*
>>> Forschungszentrum Jülich
>>> Leo-Brandt-Straße
>>> 52425 Jülich, GermanyTel: +49 2461 61-9324
>>>
>>>
>>>
>>> On Mon, Nov 14, 2016 at 11:28 AM, HINDRIKS, RIKKERT <
>>> rikkert.hindriks at upf.edu> wrote:
>>>
>>>> Hi all,
>>>>
>>>> Is it possible to load a .border file into Matlab? I am conducting my
>>>> analysis in Matlab and would like to use the border file of different
>>>> cortical parcellations
>>>> for visualization. And generally, what kind of structure does a border
>>>> file have?
>>>>
>>>> Thanks and kind regards,
>>>> Rikkert Hindrik
>>>>
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>>>> http://brainvis.wustl.edu/mailman/listinfo/caret-users
>>>>
>>>>
>>>
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>>>
>>
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>
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