Caret:Documentation
From Van Essen Lab
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* Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/ GUI Reference Guide] | * Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/ GUI Reference Guide] | ||
| - | * Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/misc/change_log.html Change Log] | + | * Caret [[Caret:Documentation/ChangeLog | Change Log]]. |
| + | * Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/misc/change_log.html OLD Change Log] | ||
== Tutorials == | == Tutorials == | ||
| - | * Caret 5. | + | * Caret 5.64 (July 2011) Quick Start [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_July2011.pdf | PDF] [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_June_2008_Data.zip | Dataset] |
* Caret 5.5 Tutorial - The Basics (including PALS atlas) [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_Tutorial_Sep22.pdf | PDF] | * Caret 5.5 Tutorial - The Basics (including PALS atlas) [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_Tutorial_Sep22.pdf | PDF] | ||
* Caret 5.5 Tutorial - User's Guide to Analysis Procedures [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_5.5_UserGuide_Analysis.pdf | PDF] | * Caret 5.5 Tutorial - User's Guide to Analysis Procedures [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_5.5_UserGuide_Analysis.pdf | PDF] | ||
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* Caret 5.5 Tutorial - Contours and Sections [http://brainvis.wustl.edu/wiki_linked_files/documentation/caret5.5_contours_tutorial.pdf | PDF] | * Caret 5.5 Tutorial - Contours and Sections [http://brainvis.wustl.edu/wiki_linked_files/documentation/caret5.5_contours_tutorial.pdf | PDF] | ||
* Other [http://sumsdb.wustl.edu/sums/directory.do?id=707139&dir_name=TUTORIALS | Caret Tutorials] | * Other [http://sumsdb.wustl.edu/sums/directory.do?id=707139&dir_name=TUTORIALS | Caret Tutorials] | ||
| + | |||
| + | == Caret Information and Operations == | ||
| + | |||
| + | [[Caret:Documentation/CreateiPhoneMovie | Create a Movie on a Apple Macintosh]] | ||
| + | |||
| + | [[Caret:Documentation/FileNamingConventions | File Naming Conventions]] | ||
| + | |||
| + | [[Caret:Operations/Foci | Foci]] | ||
| + | |||
| + | [[Caret:Operations/Freesurfer_to_fs_LR | Freesurfer to fs_LR]] | ||
| + | |||
| + | [[Caret:Operations/MapVolumeToSurface | Map Functional or Label Volume to a Surface]] | ||
| + | |||
| + | [[Caret:Operations/MetricAutoLoad | Metric Auto Load (for tractography data)]] | ||
| + | |||
| + | [[Caret:Documentation:MetricSmoothing | Metric Smoothing Algorithms]] | ||
| + | |||
| + | [[Caret:Operations/Morphing | Morphing]] | ||
| + | |||
| + | [[Caret:Operations/MyelinMapping | Myelin Mapping]] | ||
| + | |||
| + | [[Caret:Operations/Segmentation | Segmentation]] | ||
| + | |||
| + | [[Caret:Documentation:Statistics | Statistics]] | ||
| + | |||
| + | [[Caret:Operations/StudyMetadata | Study Metadata]] | ||
| + | |||
| + | [[Caret:Operations/SurfaceBasedRegistration | Surface-Based Registration]] | ||
| + | |||
| + | [[Caret:Operations/FreeSurferAndFsAverage | Surface-BasedRegistration with FreeSurfer and FS Average]] | ||
| + | |||
| + | [[Caret:Operations/Vectors | Vectors]] | ||
| + | |||
| + | == Misc == | ||
| + | |||
| + | [[Caret:Documentation:CaretNiftiExtension | Caret's NIFTI Volume File Extension]] | ||
| + | |||
| + | == Setting up QtCreator IDE for C++ Caret Development == | ||
| + | |||
| + | [[Caret5:QtCreator | Setup Qt Creator]] | ||
| + | |||
| + | == Other Resources == | ||
| + | |||
| + | Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008. Guidelines for reporting an fMRI study. NeuroImage 40, 409-414. [http://dx.doi.org/doi:10.1016/j.neuroimage.2007.11.048 Link] | ||
| + | |||
| + | Peirre-Louis Bazin has written a good explanation of the Talairach coordinate system. [http://mipav.cit.nih.gov/documentation/presentations/talairach.pdf Link] | ||
Latest revision as of 16:48, 19 March 2012
Contents |
Documentation
Online Documentation
- Caret GUI Reference Guide
- Caret Change Log.
- Caret OLD Change Log
Tutorials
- Caret 5.64 (July 2011) Quick Start | PDF | Dataset
- Caret 5.5 Tutorial - The Basics (including PALS atlas) | PDF
- Caret 5.5 Tutorial - User's Guide to Analysis Procedures | PDF
- Caret 5.5 Tutorial - Segmentation, Flattening, and Registration| PDF
- Caret 5.5 Tutorial - Contours and Sections | PDF
- Other | Caret Tutorials
Caret Information and Operations
Create a Movie on a Apple Macintosh
Map Functional or Label Volume to a Surface
Metric Auto Load (for tractography data)
Surface-BasedRegistration with FreeSurfer and FS Average
Misc
Caret's NIFTI Volume File Extension
Setting up QtCreator IDE for C++ Caret Development
Other Resources
Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008. Guidelines for reporting an fMRI study. NeuroImage 40, 409-414. Link
Peirre-Louis Bazin has written a good explanation of the Talairach coordinate system. Link
