Caret:Documentation

From Van Essen Lab

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* Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/  GUI Reference Guide]
* Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/  GUI Reference Guide]
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* Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/misc/change_log.html  Change Log]
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* Caret [[Caret:Documentation/ChangeLog | Change Log]].
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* Caret [http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/misc/change_log.html  OLD Change Log]
== Tutorials ==
== Tutorials ==
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* Caret 5.52 (June 2008) Quick Start [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_June_2008.pdf | PDF]  [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_June_2008_Data.zip | Dataset]
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* Caret 5.64 (July 2011) Quick Start [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_July2011.pdf | PDF]  [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret5_Quick_Start_June_2008_Data.zip | Dataset]
* Caret 5.5 Tutorial - The Basics (including PALS atlas) [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_Tutorial_Sep22.pdf | PDF]
* Caret 5.5 Tutorial - The Basics (including PALS atlas) [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_Tutorial_Sep22.pdf | PDF]
* Caret 5.5 Tutorial - User's Guide to Analysis Procedures [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_5.5_UserGuide_Analysis.pdf | PDF]
* Caret 5.5 Tutorial - User's Guide to Analysis Procedures [http://brainvis.wustl.edu/wiki_linked_files/documentation/Caret_5.5_UserGuide_Analysis.pdf | PDF]
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== Caret Information and Operations ==
== Caret Information and Operations ==
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[[Caret:Documentation/CreateiPhoneMovie | Create a Movie on a Apple Macintosh]]
[[Caret:Documentation/FileNamingConventions | File Naming Conventions]]
[[Caret:Documentation/FileNamingConventions | File Naming Conventions]]
[[Caret:Operations/Foci | Foci]]
[[Caret:Operations/Foci | Foci]]
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[[Caret:Operations/Freesurfer_to_fs_LR | Freesurfer to fs_LR]]
[[Caret:Operations/MapVolumeToSurface | Map Functional or Label Volume to a Surface]]
[[Caret:Operations/MapVolumeToSurface | Map Functional or Label Volume to a Surface]]
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[[Caret:Operations/Morphing | Morphing]]
[[Caret:Operations/Morphing | Morphing]]
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[[Caret:Operations/MyelinMapping | Myelin Mapping]]
[[Caret:Operations/Segmentation | Segmentation]]
[[Caret:Operations/Segmentation | Segmentation]]
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[[Caret:Operations/SurfaceBasedRegistration | Surface-Based Registration]]
[[Caret:Operations/SurfaceBasedRegistration | Surface-Based Registration]]
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[[Caret:Operations/FreeSurferAndFsAverage | Surface-BasedRegistration with FreeSurfer and FS Average]]
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[[Caret:Operations/Vectors | Vectors]]
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== Misc ==
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[[Caret:Documentation:CaretNiftiExtension | Caret's NIFTI Volume File Extension]]
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== Setting up QtCreator IDE for C++ Caret Development ==
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[[Caret5:QtCreator | Setup Qt Creator]]
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== Other Resources ==
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Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008.  Guidelines for reporting an fMRI study.  NeuroImage 40, 409-414.  [http://dx.doi.org/doi:10.1016/j.neuroimage.2007.11.048  Link]
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Peirre-Louis Bazin has written a good explanation of the Talairach coordinate system.  [http://mipav.cit.nih.gov/documentation/presentations/talairach.pdf Link]

Latest revision as of 16:48, 19 March 2012

Contents

Documentation

Online Documentation

Tutorials

  • Caret 5.64 (July 2011) Quick Start | PDF | Dataset
  • Caret 5.5 Tutorial - The Basics (including PALS atlas) | PDF
  • Caret 5.5 Tutorial - User's Guide to Analysis Procedures | PDF
  • Caret 5.5 Tutorial - Segmentation, Flattening, and Registration| PDF
  • Caret 5.5 Tutorial - Contours and Sections | PDF
  • Other | Caret Tutorials

Caret Information and Operations

Create a Movie on a Apple Macintosh

File Naming Conventions

Foci

Freesurfer to fs_LR

Map Functional or Label Volume to a Surface

Metric Auto Load (for tractography data)

Metric Smoothing Algorithms

Morphing

Myelin Mapping

Segmentation

Statistics

Study Metadata

Surface-Based Registration

Surface-BasedRegistration with FreeSurfer and FS Average

Vectors

Misc

Caret's NIFTI Volume File Extension

Setting up QtCreator IDE for C++ Caret Development

Setup Qt Creator

Other Resources

Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008. Guidelines for reporting an fMRI study. NeuroImage 40, 409-414. Link

Peirre-Louis Bazin has written a good explanation of the Talairach coordinate system. Link

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