Caret:Documentation

From Van Essen Lab

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Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008.  Guidelines for reporting an fMRI study.  NeuroImage 40, 409-414.  [http://dx.doi.org/doi:10.1016/j.neuroimage.2007.11.048  Link]
Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008.  Guidelines for reporting an fMRI study.  NeuroImage 40, 409-414.  [http://dx.doi.org/doi:10.1016/j.neuroimage.2007.11.048  Link]
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A description of the Talairach Coordinate System by Pierre-Louis Bazin. [http://mipav.cit.nih.gov/documentation/presentations/talairach.pdf Link]
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Mapping to the Talairach coordinate system using MIPAV and application to Atlas-based volumetric measurements by Pierre-Louis Bazin, [http://mipav.cit.nih.gov/documentation/presentations/talairach.pdf Link].  This document provides a good explanation of the Talairach coordinate system.

Revision as of 19:14, 13 August 2009

Contents

Documentation

Online Documentation

Tutorials

  • Caret 5.52 (June 2008) Quick Start | PDF | Dataset
  • Caret 5.5 Tutorial - The Basics (including PALS atlas) | PDF
  • Caret 5.5 Tutorial - User's Guide to Analysis Procedures | PDF
  • Caret 5.5 Tutorial - Segmentation, Flattening, and Registration| PDF
  • Caret 5.5 Tutorial - Contours and Sections | PDF
  • Other | Caret Tutorials

Caret Information and Operations

File Naming Conventions

Foci

Map Functional or Label Volume to a Surface

Metric Auto Load (for tractography data)

Metric Smoothing Algorithms

Morphing

Segmentation

Statistics

Study Metadata

Surface-Based Registration

Vectors

Other Resources

Poldrack, R.A., Fletcher, P.C., Henson R.N., Worsley K.J., Brett M., Nichols T.E., 2008. Guidelines for reporting an fMRI study. NeuroImage 40, 409-414. Link

Mapping to the Talairach coordinate system using MIPAV and application to Atlas-based volumetric measurements by Pierre-Louis Bazin, Link. This document provides a good explanation of the Talairach coordinate system.

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